Target Genes
The majority of nectary-enriched target genes for this study were identified through a microarray study of Arabidopsis nectaries (Kram et al., BMC Plant Biology, 9:92). The specific nectary tissues examined included: immature lateral nectaries (ILN, from Stage 12 flowers), mature median nectaries (MMN, from Stage 14-15 flowers), and mature lateral nectaries (MLN, from stage 14-15 flowers). A follow-up examination of transcription in Brassica rapa nectaries confirmed the conservation of gene expression in the Brassicaceae (Hampton et al., PLoS ONE, 5:e8782). Some target genes are not nectary-enriched, but are involved in pathways potentially affecting nectary function (e.g., hormone biosynthesis and response).
| Locus | Gene Name | Description |
|---|---|---|
| At1g02400 | ATGA2OX6, DTA1, GIBBERELLIN 2-OXIDASE 6, T6A9.9, T6A9_9 | Encodes a gibberellin 2-oxidase. |
| AT1G03770 | RING1B | Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. |
| AT1G15170 | F9L1.11, F9L1_11, MATE efflux family protein | MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15180.1); Has 8903 Blast hits to 8835 proteins in 2013 species: Archae - 124; Bacteria - 6072; Metazoa - 149; Fungi - 330; Plants - 1330; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink). |
| AT1G17960 | threonyl-tRNA synthetase, putative | Threonyl-tRNA synthetase; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: inflorescence meristem, root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1); Has 16132 Blast hits to 11197 proteins in 2892 species: Archae - 329; Bacteria - 9775; Metazoa - 548; Fungi - 378; Plants - 140; Viruses - 0; Other Eukaryotes - 4962 (source: NCBI BLink). |
| AT1G18720 | Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | |
| AT1G19640 | JASMONIC ACID CARBOXYL METHYLTRANSFERASE, JMT | Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment. |
| AT1G20070 | unknown protein | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
| AT1G23010 | LOW PHOSPHATE ROOT1, LPR1 | Encodes a protein with multicopper oxidase activity. Located in ER. Function together with LPR2 (AT1G71040) and a P5-type ATPase (At5g23630/PDR2) in a common pathway that adjusts root meristem activity to Pi (inorganic phosphate) availability. |
| AT1G23300 | MATE efflux family protein | MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 9654 Blast hits to 9598 proteins in 1955 species: Archae - 179; Bacteria - 6865; Metazoa - 142; Fungi - 320; Plants - 1342; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink). |
| AT1G29230 | ATCIPK18, ATWL1, CBL-INTERACTING PROTEIN KINASE 18, CIPK18, F28N24.9, F28N24_9, SNF1-RELATED PROTEIN KINASE 3.20, SNRK3.20, WL1, WPL4-LIKE 1 | Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18). |
| AT1G32640 | ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, MYC2, RD22BP1, ZBF1 | Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif and interacts with Jasmonate ZIM-domain proteins. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light–mediated photomorphogenic growth and blue and far-red-light–regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. |
| AT1G35190 | T32G9.27, T32G9_27 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, alkaloid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G46490.1); Has 8692 Blast hits to 8659 proteins in 992 species: Archae - 0; Bacteria - 1158; Metazoa - 125; Fungi - 1109; Plants - 4572; Viruses - 0; Other Eukaryotes - 1728 (source: NCBI BLink). |
| AT1G51340 | MATE efflux family protein | MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G08040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
| At1g51640 | ATEXO70G2, EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G2, F19C24.13 | A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. |
| AT1G62360 | BUM, BUM1, BUMBERSHOOT, BUMBERSHOOT 1, SHL, SHOOT MERISTEMLESS, SHOOTLESS, STM, WALDMEISTER, WALDMEISTER 1, WAM, WAM1 | Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. |
| AT1G69180 | CRABS CLAW, CRC, F4N2.14, F4N2_14 | Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region. |
| At1g69970 | CLAVATA3/ESR-RELATED 26, CLE26, F20P5.29, F20P5_29 | Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo. |
| AT1G70270 | unknown protein | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
| AT1G73220 | ATOCT1, OCT1, ORGANIC CATION/CARNITINE TRANSPORTER1 | organic cation/carnitine transporter1 (1-Oct); FUNCTIONS IN: carnitine transporter activity, carbohydrate transmembrane transporter activity, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 2 (TAIR:AT1G79360.1); Has 16805 Blast hits to 16754 proteins in 1584 species: Archae - 351; Bacteria - 7847; Metazoa - 4511; Fungi - 2312; Plants - 1172; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink). |
| AT1G74020 | SS2, STRICTOSIDINE SYNTHASE 2 | Encodes AtSS-2 strictosidine synthase. |
| AT1G74820 | cupin family protein | RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1566 Blast hits to 1545 proteins in 124 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 33; Plants - 1424; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). |
| AT1G75170 | SEC14 cytosolic factor family protein | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G36640.1); Has 1901 Blast hits to 1901 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 731; Fungi - 478; Plants - 462; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink). |
| AT1G75370 | SEC14 cytosolic factor, putative | SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G19650.1). |
| AT1G77110 | PIN-FORMED 6, PIN6 | Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux. A detailed description of PIN6 and MYB57 involvement in nectar production can be viewed at: http://mediamill.cla.umn.edu/mediamill/embedqt/165039 |
| AT1G77850 | ARF17, AUXIN RESPONSE FACTOR 17 | Posttranscriptionally regulated by miR160 and is essential for proper development.Regulates early auxin response genes. |
| AT1G79700 | Integrase-type DNA-binding superfamily protein | Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ARIA-interacting double AP2 domain protein (TAIR:AT1G16060.1); Has 7501 Blast hits to 5104 proteins in 263 species: Archae - 0; Bacteria - 38; Metazoa - 0; Fungi - 0; Plants - 7383; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). |
| AT2G01980 | ARABIDOPSIS NA+/H+ ANTIPORTER 7, ARABIDOPSIS SALT OVERLY SENSITIVE 1, ATNHX7, ATSOS1, F14H20.5, F14H20_5, SALT OVERLY SENSITIVE 1, SOS1 | Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. |
| AT2G03530 | ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ATUPS2, UPS2, UREIDE PERMEASE 2 | Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. |
| AT2G06050 | ATOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, OXOPHYTODIENOATE-REDUCTASE 3 | Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Shows activity towards 2,4,6-trinitrotoluene. |
| AT2G13650 | GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1, GONST1 | Encodes a Golgi-localized GDP-mannose transporter. It can transport ADP-glucose in vitro. |
| AT2G14210 | AGAMOUS-LIKE 44, AGL44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 | MADS box gene, transcription factor |
| At2g22680 | zinc finger (C3HC4-type RING finger) family protein | zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G37890.2); Has 699 Blast hits to 698 proteins in 157 species: Archae - 2; Bacteria - 184; Metazoa - 117; Fungi - 77; Plants - 198; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). |
| AT2G26580 | YAB5, YABBY5 | YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). |
| AT2G28350 | ARF10, AUXIN RESPONSE FACTOR 10 | Involved in root cap cell differentiation. |
| AT2G30650 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: petal, leaf whorl, sepal, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 32067 Blast hits to 32054 proteins in 2254 species: Archae - 421; Bacteria - 21939; Metazoa - 1258; Fungi - 833; Plants - 620; Viruses - 0; Other Eukaryotes - 6996 (source: NCBI BLink). |
| AT2G35920 | helicase domain-containing protein | RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G04895.1); Has 15667 Blast hits to 10761 proteins in 1709 species: Archae - 0; Bacteria - 5024; Metazoa - 4470; Fungi - 1848; Plants - 1329; Viruses - 777; Other Eukaryotes - 2219 (source: NCBI BLink). |
| AT2G36190 | ATCWINV4, CELL WALL INVERTASE 4, CWINV4 | cwINV4 appears to function as a cell wall-localized invertase (that can catalyze the hydrolysis of sucrose into fructose and glucose) based on the phenotype of cwinv4 mutants. cwINV4 transcripts are expressed at high levels in lateral and median nectaries and this enzyme plays an important role in nectar production. |
| AT2G39060 | ATSWEET9, SWEET9 | Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 984 Blast hits to 939 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 0; Plants - 622; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). |
| AT2G39380 | EXO70H2, F12L6.4, F12L6_4, ATEXO70H2, EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2 | A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. |
| AT2G39940 | COI1, CORONATINE INSENSITIVE 1 | Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation. |
| AT2G42830 | AGAMOUS-LIKE 5, AGL5, SHATTERPROOF 2, SHP2 | AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). |
| At2g44480 | BETA GLUCOSIDASE 17 (BGLU17) | BETA GLUCOSIDASE 17 (BGLU17); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, male gametophyte, sepal, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU15 (BETA GLUCOSIDASE 15); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44450.1); Has 5774 Blast hits to 5518 proteins in 796 species: Archae - 98; Bacteria - 3153; Metazoa - 590; Fungi - 134; Plants - 853; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink). |
| At2g44810 | DAD1, F16B22.45 | Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis. |
| AT2G47810 | "NUCLEAR FACTOR Y, SUBUNIT B5", NF-YB5 | "nuclear factor Y, subunit B5" (NF-YB5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sepal, male gametophyte, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B3 (TAIR:AT4G14540.1); Has 1476 Blast hits to 1476 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 483; Fungi - 353; Plants - 526; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). |
| AT3G01530 | ATMYB57, MYB DOMAIN PROTEIN 57, MYB57 | Member of the R2R3 factor gene family. |
| AT3G02280 | Flavodoxin family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 7053 Blast hits to 6598 proteins in 1587 species: Archae - 9; Bacteria - 3832; Metazoa - 1042; Fungi - 865; Plants - 492; Viruses - 0; Other Eukaryotes - 813 (source: NCBI BLink). | |
| At3g06330 | zinc finger (C3HC4-type RING finger) family protein | zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18760.1); Has 1171 Blast hits to 1014 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 74; Plants - 331; Viruses - 4; Other Eukaryotes - 225 (source: NCBI BLink). |
| AT3G09600 | LCL5, LHY-CCA1-LIKE5, REVEILLE 8, RVE8 | Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. |
| AT3G10340 | PAL4, PHENYLALANINE AMMONIA-LYASE 4 | Encodes PAL4, a putative a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4). |
| AT3G11430 | ATGPAT5, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5, GPAT5 | Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester. |
| AT3G17600 | IAA31, INDOLE-3-ACETIC ACID INDUCIBLE 31 | Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. |
| AT3G25640 | unknown protein | Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT5G23100.1); Has 258 Blast hits to 256 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
| AT3G25810 | myrcene/ocimene synthase, putative | Terpenoid cyclases/Protein prenyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1745 Blast hits to 1713 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1740; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). |
| AT3G27810 | ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, ATMYB21, ATMYB3, MYB DOMAIN PROTEIN 21, MYB21 | Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. |
| AT3G45780 | JK224, NONPHOTOTROPIC HYPOCOTYL 1, NPH1, PHOT1, PHOTOTROPIN 1, ROOT PHOTOTROPISM 1, RPT1 | Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. |
| AT3G48000 | ALDEHYDE DEHYDROGENASE 2, ALDEHYDE DEHYDROGENASE 2A, ALDEHYDE DEHYDROGENASE 2B4, ALDH2, ALDH2A, ALDH2B4 | Encodes a putative (NAD+) aldehyde dehydrogenase. |
| AT3G50410 | OBF BINDING PROTEIN 1, OBP1 | Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development. |
| AT3G51400 | Arabidopsis protein of unknown function (DUF241); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35720.1); Has 444 Blast hits to 436 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | |
| AT3G52290 | IQ-DOMAIN 3, IQD3 | IQ-domain 3 (IQD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 2 (TAIR:AT5G03040.3); Has 829 Blast hits to 818 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 804; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). |
| AT3G54820 | F28P10.200, PIP2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2;5, PLASMA MEMBRANE INTRINSIC PROTEIN 2D | PLASMA MEMBRANE INTRINSIC PROTEIN 2;5 (PIP2;5); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel (TAIR:AT2G37170.1); Has 6824 Blast hits to 6815 proteins in 1262 species: Archae - 57; Bacteria - 2642; Metazoa - 1283; Fungi - 291; Plants - 1508; Viruses - 2; Other Eukaryotes - 1041 (source: NCBI BLink). |
| AT3G55890 | Yippee family putative zinc-binding protein | Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 985 Blast hits to 985 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 205; Plants - 238; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). |
| AT3G58780 | AGAMOUS-LIKE 1, AGL1, SHATTERPROOF 1, SHP1 | One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. |
| At3g62150 | P-GLYCOPROTEIN 21, PGP21, T17J13.110 | P-GLYCOPROTEIN 21 (PGP21); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase (TAIR:AT2G47000.1); Has 503411 Blast hits to 234839 proteins in 2688 species: Archae - 8850; Bacteria - 337440; Metazoa - 15433; Fungi - 8384; Plants - 4837; Viruses - 46; Other Eukaryotes - 128421 (source: NCBI BLink). |
| AT4G00950 | MATERNAL EFFECT EMBRYO ARREST 47, MEE47 | maternal effect embryo arrest 47 (MEE47); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
| AT4G02075 | PIT1, PITCHOUN 1 | pitchoun 1 (PIT1); FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G02610.1); Has 1559 Blast hits to 1554 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 105; Plants - 585; Viruses - 28; Other Eukaryotes - 163 (source: NCBI BLink). |
| AT4G12530 | lipid transfer protein (LTP) family protein | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12510.1); Has 749 Blast hits to 743 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
| AT4G13100 | RING/U-box superfamily protein | RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
| AT4G23920 | ATUGE2, T32A16.90, T32A16_90, UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2, UDP-GLC 4-EPIMERASE 2, UGE2 | Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis. |
| AT4G24400 | ATCIPK8, CBL-INTERACTING PROTEIN KINASE 8, CIPK8, PKS11, PROTEIN KINASE 11, SNF1-RELATED PROTEIN KINASE 3.13, SNRK3.13, T22A6.230, T22A6_230 | Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response. |
| AT4G25290 | F24A6.130, F24A6_130 | DNA photolyase; FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G36530.2); Has 4147 Blast hits to 4144 proteins in 685 species: Archae - 35; Bacteria - 2248; Metazoa - 244; Fungi - 30; Plants - 260; Viruses - 0; Other Eukaryotes - 1330 (source: NCBI BLink). |
| At4g25300 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G25310.1); Has 5835 Blast hits to 5806 proteins in 680 species: Archae - 0; Bacteria - 700; Metazoa - 111; Fungi - 623; Plants - 3093; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink). |
| At4g27260 | WES1 | encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. |
| At4g30140 | GDSL-motif lipase/hydrolase family protein | GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G19050.1); Has 1641 Blast hits to 1626 proteins in 101 species: Archae - 0; Bacteria - 110; Metazoa - 1; Fungi - 4; Plants - 1518; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). |
| AT4G30560 | ATCNGC9, CNGC9, CYCLIC NUCLEOTIDE GATED CHANNEL 9, F17I23.100, F17I23_100 | member of Cyclic nucleotide gated channel family |
| AT4G31570 | unknown protein | CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). |
| AT4G31820 | ENHANCER OF PINOID, ENP, MAB4, MACCHI-BOU 4, NAKED PINS IN YUC MUTANTS 1, NPY1 | A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development. |
| AT4G34680 | GATA3, GATA TRANSCRIPTION FACTOR 3 | Encodes a member of the GATA factor family of zinc finger transcription factors. |
| AT4G35480 | RHA3B, RING-H2 FINGER A3B | Encodes a putative RING-H2 finger protein RHA3b. |
| AT4G38620 | ATMYB4, MYB DOMAIN PROTEIN 4, MYB4 | Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2. |
| AT4G38810 | calcium-binding EF hand family protein | Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28830.1); Has 314 Blast hits to 218 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 310; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
| AT5G07680 | ATNAC4, NAC080, ANAC079, ANAC080, MBK20.13, MBK20_13, NAC DOMAIN CONTAINING PROTEIN 80, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 79 | NAC domain containing protein 80 (NAC080); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 100 (TAIR:AT5G61430.1); Has 3092 Blast hits to 3083 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3092; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
| At5g09570 | Cox19-like CHCH family protein | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64400.1); Has 141 Blast hits to 141 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 31; Plants - 42; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). |
| AT5G11110 | KNS2, SPS1, SPS2F, SPSA2, ATSPS2F, T5K6.100, T5K6_100, KAONASHI 2, SUCROSE PHOSPHATE SYNTHASE 1, SUCROSE PHOSPHATE SYNTHASE 2F, SUCROSE-PHOSPHATE SYNTHASE A2 | Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation. |
| AT5G16150 | GLT1, PGLCT, T21H19.70, T21H19_70, GLUCOSE TRANSPORTER 1, PLASTIDIC GLC TRANSLOCATOR | Encodes a putative plastidic glucose transporter. |
| AT5G20280 | SPS1F, SPSA1, ATSPS1F, F5O24.170, F5O24_170, SUCROSE PHOSPHATE SYNTHASE 1F, SUCROSE-PHOSPHATE SYNTHASE A1 | Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted. |
| AT5G20830 | SUS1, ASUS1, ATSUS1, T1M15.230, T1M15_230, SUCROSE SYNTHASE 1 | Encodes a protein with sucrose synthase activity (SUS1). |
| AT5G24150 | SQE5, SQP1, SQUALENE MONOOXYGENASE 5 | squalene monooxygenase gene homolog |
| AT5G24270 | ATSOS3, CALCINEURIN B-LIKE PROTEIN 4, CBL4, SALT OVERLY SENSITIVE 3, SOS3 | encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium. |
| AT5G26310 | UGT72E3 | UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides. |
| AT5G26340 | ATSTP13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 | Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. |
| AT5G26660 | ATMYB86, MYB DOMAIN PROTEIN 86, MYB86 | myb domain protein 86 (MYB86); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 9095 Blast hits to 8321 proteins in 479 species: Archae - 0; Bacteria - 3; Metazoa - 831; Fungi - 514; Plants - 5926; Viruses - 6; Other Eukaryotes - 1815 (source: NCBI BLink). |
| AT5G38120 | 4CL8 | AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 83515 Blast hits to 76136 proteins in 3676 species: Archae - 1169; Bacteria - 53948; Metazoa - 3493; Fungi - 4649; Plants - 2738; Viruses - 1; Other Eukaryotes - 17517 (source: NCBI BLink). |
| AT5G38130 | HXXXD-type acyl-transferase family protein (no T-DNA mutants are available for this gene) | HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G50300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
| AT5G40360 | ATMYB115, MYB DOMAIN PROTEIN 115, MYB115 | putative transcription factor (MYB115) |
| AT5G41790 | CIP1, COP1-INTERACTIVE PROTEIN 1, K16L22.7, K16L22_7 | encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light. |
| AT5G42230 | SCPL41, SERINE CARBOXYPEPTIDASE-LIKE 41 | serine carboxypeptidase-like 41 (scpl41); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 42 (TAIR:AT5G42240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
| AT5G42650 | ALLENE OXIDE SYNTHASE, AOS, CYP74A, CYTOCHROME P450 74A, DDE2, DELAYED DEHISCENCE 2 | Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity. |
| AT5G43580 | UNUSUAL SERINE PROTEASE INHIBITOR, UPI | Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Functions in resistance to necrotrophic fungi and insect herbivory. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. |
| AT5G44620 | "CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 3", CYP706A3 | member of CYP706A |
| AT5G44630 | sequiterpene synthase | Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries. |
| AT5G45950 | GSDL-motif lipase family protein | GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G45960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
| AT5G46115 | unknown protein | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
| AT5G46540 | K11I1.13, K11I1_13, P-GLYCOPROTEIN 7, PGP7 | P-GLYCOPROTEIN 7 (PGP7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP9 (P-GLYCOPROTEIN 9); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G18050.1); Has 497710 Blast hits to 233819 proteins in 2692 species: Archae - 8811; Bacteria - 335036; Metazoa - 15263; Fungi - 7680; Plants - 4601; Viruses - 35; Other Eukaryotes - 126284 (source: NCBI BLink). |
| AT5G48880 | 3-KETO-ACYL-COENZYME A THIOLASE 5, KAT5, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2, PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, PKT1, PKT2 | Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2. |
| AT5G51810 | AT2353, GA20OX2, MIO24.5, MIO24_5, ATGA20OX2, GIBBERELLIN 20 OXIDASE 2 | Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. |
| At5g52830 | ATWRKY27, MXC20.5, MXC20_5, WRKY DNA-BINDING PROTEIN 27, WRKY27 | Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. |
| AT5G54160 | ATOMT1, CAFFEATE O-METHYLTRANSFERASE 1, COMT1, O-METHYLTRANSFERASE 1, OMT1 | A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3’-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3’-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase |
| AT5G60760 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45090.1); Has 1216 Blast hits to 969 proteins in 195 species: Archae - 93; Bacteria - 85; Metazoa - 220; Fungi - 67; Plants - 127; Viruses - 43; Other Eukaryotes - 581 (source: NCBI BLink). |
| AT5G65110 | ACX2, ACYL-COA OXIDASE 2, ATACX2 | Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis. |
| AT5G67440 | MAB4/ENP/NPY1-LIKE 2, MEL2, NAKED PINS IN YUC MUTANTS 3, NPY3 | A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. |